rs27960906 SNP Detail

Summary

• ID
  rs27960906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69920587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAGAAAA CACAGGAATA
  TGGGAGAGGG GGACATGTGA GAATTTTCCT CCCAAAGTGT GGTATAGACG AGAACTCCAT
  TGGTGGTGTT GCCTGATGCA GTATTACACA GTTTATTAAT TCTTCTCTTG GGAGTAGTGC
  AGAGACCCAT CAGAGCTCAT GGGGTTTCTG AGAGGCTTGC AAACCTCCCA CATGGCTGAG
  R
  GCCACCACCC ACCTCGTTCT AGACAGACAT AGCACTTCCA ATGAATGGAG CTGGCATAGC
  CTGAGGTGTC CATCTTAGAG AGTTCACTCT TTTCATTTCA TGTGAAAAAC TGTAGGAGGT
  CTAGATGCCT CTTTAGGGTG TCCTGAGCTT CATAGCATCA TCCCGGATAC TAGAAACTAT
  TCCTGGACTT TTCTATGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38128525	NES09274866	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27960906					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38128525	NES09274866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69920587 () rs orientation: forward

Symbol	Name	Function Class
Myo3b	myosin IIIB	within coordinates
Rr62309	regulatory region 62309	15 bp proximal
Rr397026	regulatory region 397026	961 bp upstream
Tssr18190	transcription start site region 18190	1683 bp upstream
Tssr24452	transcription start site region 24452	507 bp upstream