rs27960909 SNP Detail

Summary

• ID
  rs27960909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69920259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATACTGG ACATACAGCT
  CTGCCTATCA GGAGTTCATT TTATATAGAG AAAAAAAAAA AGGAAGCAGG GGAGGGCATT
  GTTTTGAATT TCCATGGTAC TGCCTTAGTG AAGCCACTTA CTAAATGAAT ATCTGTCTGT
  CTAGACAGGG GTTTAGGTAA TGAGAAACAG TGTATTTCCC AGACATTAGG CTGATGATTC
  R
  TGGGCAGATT GGAGAATGTT CATTCTGAGT TCCTGTCTGC ATCGCTCTTA CTTTCTAAAC
  AGAAATGCCC TCCTGAGGTG AGATCCTTTG TCTTGCTACT GACTTGGCTA TTCCTGGTAG
  AGGAAGGGTT GAGAAAACAC AGGAATATGG GAGAGGGGGA CATGTGAGAA TTTTCCTCCC
  AAAGTGTGGT ATAGACGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38128528	NES09274863	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27960909					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38128528	NES09274863	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69920259 () rs orientation: forward

Symbol	Name	Function Class
Myo3b	myosin IIIB	within coordinates
Rr397026	regulatory region 397026	1289 bp upstream
Tssr24452	transcription start site region 24452	179 bp upstream