rs27961328 SNP Detail

Summary

• ID
  rs27961328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70761825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAG CATCAAGCCT AGAAGGATAA
  R
  CCCCACAGGT GGGCAGCCCA GCGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38125651	NES09282454	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A	G	A	G	G		G	G	A	G		A
ss146735551	ENSMUSSNP4556589	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320334021	CHEV_2_70769538	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27961328					SNP	A	A	G	G	A	A	A	G	A	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125651	NES09282454	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70761825 () rs orientation: forward

Symbol	Name	Function Class
Gm39843	predicted gene, 39843	within coordinates
Rr62360	regulatory region 62360	1577 bp proximal
Rr64262	regulatory region 64262	1246 bp distal
Rr367203	regulatory region 367203	549 bp downstream
Rr367204	regulatory region 367204	237 bp downstream
Rr367205	regulatory region 367205	1631 bp upstream
Tssr18236	transcription start site region 18236	315 bp downstream