rs27961329 SNP Detail

Summary

• ID
  rs27961329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70761513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGC AGCGGTCTCC AGGAGGACTT
  Y
  ATGCTAACCG CTTGCCAAGT GCAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38125652	NES09282464	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	T	C	T	C	C		C	C	T	C		T
ss320334020	CHEV_2_70769226	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27961329					SNP	T	C	C	T	T	T	C	T	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125652	NES09282464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70761513 () rs orientation: forward

Symbol	Name	Function Class
Gm39843	predicted gene, 39843	within coordinates
Rr62360	regulatory region 62360	1889 bp proximal
Rr64262	regulatory region 64262	934 bp distal
Rr367203	regulatory region 367203	237 bp downstream
Rr367204	regulatory region 367204	within coordinates
Rr367205	regulatory region 367205	1943 bp upstream
Tssr18236	transcription start site region 18236	3 bp downstream