rs27964374 SNP Detail

Summary

• ID
  rs27964374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75183913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTAAACA CTGAGTTTAA ACATGACAGC TCCCCGTTTC
  TTGCTCTTCC TATGCATCAT TTGCTCTGGT TTTAAACGAA ATTGCTGAAG AGCTTTCCAA
  R
  CATTACTGTA GCTATTGTCG TTTGCCCCCC CCCCTCGGCC CCCCCCCATC CTCTCCTTTG
  CACGGTTGAT CATTCCATCC TGAGAGTTCA ACCCCCAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38110697	NES09273524	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A	A		G	G	A	G		G
ss45325109	mCV25093970	ABI	CRAMUS_MOUSE	f	SNP		A						G
ss146766292	ENSMUSSNP7060419	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320350047	CHEV_2_75191626	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27964374					SNP	A	A	A	A	A	A	G	G	A	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38110697	NES09273524	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75183913 () rs orientation: forward

Symbol	Name	Function Class
Gm39857	predicted gene, 39857	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559469	regulatory region 559469	1653 bp distal
Rr559470	regulatory region 559470	584 bp distal
Rr559471	regulatory region 559471	959 bp proximal