rs27964387 SNP Detail

Summary

• ID
  rs27964387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75181639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATTACT GGGAAGCCAG
  GAAGCGTGTG GTGAAAGCAT CTGTTGGGCC ATGTGCACGT TAGCCACTGG TGTGCTGCTC
  CTTCACATTT AGCTGCAACA GGGGCCAGGC CAGCCCAAAT GTATTTCTTT GAAGCATTAT
  GTACAAAGGC CACTTCTTGG AAATTCTGAG TTGCTCTAGA AGGATGCTGG GTACTTACTT
  R
  CCAAGCCTTT GAAGCACCGG CTAATGAGAC TGAGAGAAAC CCACTGGCCA GGCCCTGGTG
  TAAGTGGACA TTTCCCAGGG AGAAATTTTA TGCAGAGAAA ACGCTCACAT GGAGTCTTCT
  ATCATAGAGA TATGTGGTTT CCTAGACATC TGTGGTCACT GGACATTGTT CAGCCAGACC
  TTAAAATACC TCACCTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38110710	NES09273511	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	A	G	G		A
ss320350044	CHEV_2_75189352	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27964387					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38110710	NES09273511	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75181639 () rs orientation: forward

Symbol	Name	Function Class
Gm39857	predicted gene, 39857	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559469	regulatory region 559469	within coordinates
Rr559470	regulatory region 559470	1093 bp proximal