rs27964540 SNP Detail

Summary

• ID
  rs27964540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75149794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATTAAA GCTTAAAGAT
  GTTATGTAAC TTGCTGAAGG TCATGAAAGC TCCAAAGCAG AAAGCCAAGC TACTTGCTAA
  GAATCAGCCT GAATCTGAAG GCTCGTTTCT TCAGGCTGGT TTTGTCATCT CTCTCTTCTT
  CTACACTGGC CTTATCAAGG GACCTCATGA GCTTGTGCCC ACTCTTAGCT GGAGTGCAAC
  Y
  TGGTTTACAA TTGCCCCAAA GTTGCTTATT TTGAAACTCC TGGGACATTA TATAAAACCA
  CACCAAAAGA CTTTTATTAC TATACACAAC TTCATTTCAT TTTGAAAGAA TATGTCTGCA
  GGAGGTGACA CACTCGGTTG TGCATTCAGG TTGGAACAGT CCCGCCTTAC TTGACACCTT
  GGATGGCTGG CAGCCACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38110864	NES09274570	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27964540					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38110864	NES09274570	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75149794 () rs orientation: forward

Symbol	Name	Function Class
2600014E21Rik	RIKEN cDNA 2600014E21 gene	1630 bp downstream
Gm39857	predicted gene, 39857	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559466	regulatory region 559466	1040 bp distal