rs27964550 SNP Detail

Summary

• ID
  rs27964550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75147154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCATGAT TTAGAGCCCT
  CTGAGGAGCT GGTGAGTTCT CCCCTAGCCT GGCCCTAGAG CTCGTCTCTT CCTATTCCTT
  ATTCCAGACA TGCTGATAGC ATTGACTTTG TCTGCTCAAA ATCACTGAAC AACCATTGGC
  TTCCTTCCTA TGTGACAGTG CTTCAGCTTC ATTTCTCTTT CCTTGCTTTC TGATGTTAAG
  R
  ACCATCTGTG TACAGTGTGG CCTGGTAACA GAATGCACAC AACACAGTGA CAGGGGTAGC
  CACAGAGTGG GCCTCTACTC TAAAACACCC TCCAGAGTAT GTGTTAGTAG AGCAGTTGGC
  CCATGAGTTG GGTGGGGGCC TATCCTCTGG AAAACTGGTT TTCCTGGAAG TTCCTTTCCC
  AGTTGTCTAA AAGGTATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38110874	NES09274682	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		A	G	G		G
ss320349983	CHEV_2_75154867	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27964550					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38110874	NES09274682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75147154 () rs orientation: forward

Symbol	Name	Function Class
2600014E21Rik	RIKEN cDNA 2600014E21 gene	within coordinates
Gm39857	predicted gene, 39857	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559466	regulatory region 559466	1579 bp proximal