rs27964895 SNP Detail

Summary

• ID
  rs27964895
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77502902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTCCAG GTTCCAATTT
  TTGTGAGCTG TCACCCGTGC TGGGTGGCAT TTGGTGATGC AGCTGTCTGA GTCATTTCTA
  CTCCTATCAG TAACCCTTCA CCAAGCTGGA CTCCAGTGCA ATCTATGCTT TGCTCTTTAG
  TGGGCTACTT GTGTTGCTTC TAACCAGAAA CACAAAATAT GTGGTAGATT CCGATTGCTC
  M
  CTCTCACACT CTTCAACACG ACAGACAGAA GAAGACTGCG ATTCCTGAGG TGACTGAGAG
  TGTAGTTCAG TGGTAGAACT TGCCTAGCAA AACTTTCATT TCTAGCATGG AGGTTGTGTG
  GGGGTGGGGC GGTGTTTATC TTAAAAGCAA GAATGCTAAT ACTCCTTTAT CTTTTAAACA
  GTCACCACCA TGGGTGTGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38099916	NES09252726	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27964895					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38099916	NES09252726	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77502902 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr559828	regulatory region 559828			within coordinates
Rr559829	regulatory region 559829			808 bp proximal
Zfp385b	zinc finger protein 385B			Intron
				Noncoding-Transcript-Variant