rs27965037 SNP Detail

Summary

• ID
  rs27965037
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:65496903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTT TGTATAGGAC CTATCACAAT
  M
  CGTGCCTCTA AAAGGTATCT CTCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38145461	NES09295228	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	A	C		A	A	C	C		A	A	C	A		A
ss45293844	mCV23763848	ABI	CRAMUS_MOUSE	f	SNP		C					A
ss146714852	ENSMUSSNP2175916	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320322023	CHEV_2_65504616	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27965037					SNP	A	C	C	A	A	C	A	A	A	C	C	C	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38145461	NES09295228	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:65496903 () rs orientation: forward

Symbol	Name	Function Class
D2Mit90	DNA segment, Chr 2, Massachusetts Institute of Technology 90	599 bp distal
Rr1450	regulatory region 1450	1654 bp downstream
Rr558096	regulatory region 558096	1772 bp distal
Rr558097	regulatory region 558097	1069 bp distal
Rr558098	regulatory region 558098	1716 bp proximal
Scn2a	sodium channel, voltage-gated, type II, alpha	Intron