rs27965039 SNP Detail

Summary

• ID
  rs27965039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:65496558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGAAGA ACAGCCAGTG
  CTCCTAACTG AAGAGCTGTC TCTCCAGATC ACTTCCACCC TGCCATCCTG GTTTTCATCA
  CTTCTATTTC ACCAATATGA TCTTATAGTT CACCTGTCTC AAGGGAGGAT TTTGTGTTGA
  CAAGCATGTG GCTTAGGCAA AGCCAATTAA TTGGAAAGAT CACTTTGCAG AGTGGTCACT
  Y
  AGGACCTATG TAGAGTTGGG ACCGGTGAGA GATGACAGAC AGTATTTTTG TGTTTTGTTG
  TGAGTGAGTG AGTGAATGAG TGAGTGGGTG ATTAAGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGACAGAG
  AGAGACAGAG AGAGACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38145463	NES09295273	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27965039					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38145463	NES09295273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:65496558 () rs orientation: forward

Symbol	Name	Function Class
D2Mit90	DNA segment, Chr 2, Massachusetts Institute of Technology 90	254 bp distal
Rr1450	regulatory region 1450	1309 bp downstream
Rr558096	regulatory region 558096	1427 bp distal
Rr558097	regulatory region 558097	724 bp distal
Scn2a	sodium channel, voltage-gated, type II, alpha	Intron