rs27965040 SNP Detail

Summary

• ID
  rs27965040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:65496497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACATAGG GTTACGAGAG
  CTGTGAGGCA CCAAGGTTCC TCTGGGAACC AAACTCAGGT CCTTTGGAAG AACAGCCAGT
  GCTCCTAACT GAAGAGCTGT CTCTCCAGAT CACTTCCACC CTGCCATCCT GGTTTTCATC
  ACTTCTATTT CACCAATATG ATCTTATAGT TCACCTGTCT CAAGGGAGGA TTTTGTGTTG
  M
  CAAGCATGTG GCTTAGGCAA AGCCAATTAA TTGGAAAGAT CACTTTGCAG AGTGGTCACT
  CAGGACCTAT GTAGAGTTGG GACCGGTGAG AGATGACAGA CAGTATTTTT GTGTTTTGTT
  GTGAGTGAGT GAGTGAATGA GTGAGTGGGT GATTAAGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38145464	NES09295272	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27965040					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38145464	NES09295272	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:65496497 () rs orientation: forward

Symbol	Name	Function Class
D2Mit90	DNA segment, Chr 2, Massachusetts Institute of Technology 90	193 bp distal
Rr1450	regulatory region 1450	1248 bp downstream
Rr558096	regulatory region 558096	1366 bp distal
Rr558097	regulatory region 558097	663 bp distal
Scn2a	sodium channel, voltage-gated, type II, alpha	Intron