rs27965042 SNP Detail

Summary

• ID
  rs27965042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:65495079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTGCAC TTTGGTTTTT
  CATATTGTAT TGTACTCTTT TCCTAAGCCC CAACAGAAAA CATGAAAGTC TGGCTGTCCA
  GAAGTTTCTC TCCCTTGGGG AAATTGTTAG TTATAGAAAG GGGCTGAATT CAGGATGAAT
  AAAGAGAGGA AACAAAATCA CAGCAGGTGA CCACTAACAA GCCCAGGAGG ACAGGCTCAC
  Y
  GCTCAGGACA AAAGTCCTTG AGAAATCTGT TGGAAATAAA AAAAGAAAAA CTTCAAATAA
  GATTTAACAA ATGTTATCTA AGTTTCTGCA CACATTATAA GTCACTGTTT TAAAACAGTG
  CTAGAAACTG CATTTCTCAG ATTTTCTGAA TCTTCTTCAC TCTGGGGAGC CAAAGTTTCT
  AGGACTTTAA GTTATTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38145466	NES09295321	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27965042					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38145466	NES09295321	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:65495079 () rs orientation: forward

Symbol	Name	Function Class
D2Mit90	DNA segment, Chr 2, Massachusetts Institute of Technology 90	1142 bp proximal
Rr1450	regulatory region 1450	within coordinates
Rr558096	regulatory region 558096	within coordinates
Rr558097	regulatory region 558097	491 bp proximal
Scn2a	sodium channel, voltage-gated, type II, alpha	Intron