rs27965898 SNP Detail

Summary

• ID
  rs27965898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77778639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATAGCTCT CTAAGAGTTT GAGGCTAGCC TGGTATACAG
  AGTGAGTTTC AAGCCAGCCA AGGCTACATA GCAAGACCAT GTCAAAAGCA GAAAGAAAAC
  R
  AGGCAAATCA AACCAGCAAC AACAATATCA ATAAAGCAAA GGGAATAATA AAATTCTAGA
  GCTGGTCCTC ACTGTGTATT AGAGTTTCTA AAAGAGCAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38098717	NES09265958	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27965898					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38098717	NES09265958	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77778639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	1820 bp distal
Cwc22	CWC22 spliceosome-associated protein	1920 bp upstream
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	1711 bp downstream
Rr559853	regulatory region 559853	1430 bp distal
Tssr24875	transcription start site region 24875	1968 bp upstream
Tssr24876	transcription start site region 24876	1922 bp upstream
Tssr24877	transcription start site region 24877	1903 bp upstream