rs27965899 SNP Detail

Summary

• ID
  rs27965899
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77778633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGCAGAT AGCTCTCTAA GAGTTTGAGG CTAGCCTGGT
  ATACAGAGTG AGTTTCAAGC CAGCCAAGGC TACATAGCAA GACCATGTCA AAAGCAGAAA
  S
  AAAACAAGGC AAATCAAACC AGCAACAACA ATATCAATAA AGCAAAGGGA ATAATAAAAT
  TCTAGAGCTG GTCCTCACTG TGTATTAGAG TTTCTAAAAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38098718	NES09265957	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27965899					SNP	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38098718	NES09265957	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77778633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	1814 bp distal
Cwc22	CWC22 spliceosome-associated protein	1914 bp upstream
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	1705 bp downstream
Rr559853	regulatory region 559853	1424 bp distal
Tssr24875	transcription start site region 24875	1962 bp upstream
Tssr24876	transcription start site region 24876	1916 bp upstream
Tssr24877	transcription start site region 24877	1897 bp upstream