rs27965902 SNP Detail

Summary

• ID
  rs27965902
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77777581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGCCAGG GCTATACAGA GAAACCCTGT CTCCGAAAAT
  AAATAAATTA ATTAATTAAT TAAAAAATTA AAAAAAAAAG AAGCAAGTTG TATTTATGAT
  W
  CTTTCAGGGT TGGAATGTGA AATCTGTAAC GAGTTTAGAG CACTGGCCTC AATTATACTG
  TTTCCTTAGT CTTTGATTTT CAGTGTTACC AAAAGGTAAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38098721	NES09265989	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27965902					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38098721	NES09265989	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77777581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	762 bp distal
Cwc22	CWC22 spliceosome-associated protein	862 bp upstream
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	653 bp downstream
Rr559852	regulatory region 559852	1113 bp distal
Rr559853	regulatory region 559853	372 bp distal
Tssr24874	transcription start site region 24874	1038 bp upstream
Tssr24875	transcription start site region 24875	910 bp upstream
Tssr24876	transcription start site region 24876	864 bp upstream
Tssr24877	transcription start site region 24877	845 bp upstream