rs27965904 SNP Detail

Summary

• ID
  rs27965904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77777016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGACAC TTTTGAGAGC
  TAGGTTTTCG AGGCATGCTT CTTATTCTAA CACTACTCAT CTTCTAAAGC CATAAAAAGT
  AGCTCTTAGT AGACACCGTA GCTTTTCTTT CTTTTTTTTT TTTTTCAGTG TAAAAGCTTA
  ACACTAAGAT ACATACTATG AAACTACCGC AGAGGCTTAC TATATAATAC CTTGCCTGAA
  R
  ATAATAAAAA AAGTAGCGAT CCCTTTCAGA TTTTTGACAG AAGCTTTACC AAAAGTCTGT
  TTGGGAGAAG AGGGGAAAGT GACAAAATGT TTAGTATCTA TTAAGTTCCA AGATTTTAAA
  TTCAAGTGAA TGGAAGACTA TCTGATTATA AATGATATGT TGTAAGGACA GTGAGAAGTA
  AATTGGAGGC CCAACATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38098723	NES09266074	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27965904					SNP	A	A	A	A	A	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38098723	NES09266074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77777016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	197 bp distal
Cwc22	CWC22 spliceosome-associated protein	297 bp upstream
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	88 bp downstream
Rr559852	regulatory region 559852	548 bp distal
Rr559853	regulatory region 559853	within coordinates
Tssr24874	transcription start site region 24874	473 bp upstream
Tssr24875	transcription start site region 24875	345 bp upstream
Tssr24876	transcription start site region 24876	299 bp upstream
Tssr24877	transcription start site region 24877	280 bp upstream