rs27965905 SNP Detail

Summary

• ID
  rs27965905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77776974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATGACG GGAATTGTAG
  TTCGTTCGGA TAGGAGGTCA CACTAGAGAC ACTTTTGAGA GCTAGGTTTT CGAGGCATGC
  TTCTTATTCT AACACTACTC ATCTTCTAAA GCCATAAAAA GTAGCTCTTA GTAGACACCG
  TAGCTTTTCT TTCTTTTTTT TTTTTTTCAG TGTAAAAGCT TAACACTAAG ATACATACTA
  Y
  GAAACTACCG CAGAGGCTTA CTATATAATA CCTTGCCTGA AAATAATAAA AAAAGTAGCG
  ATCCCTTTCA GATTTTTGAC AGAAGCTTTA CCAAAAGTCT GTTTGGGAGA AGAGGGGAAA
  GTGACAAAAT GTTTAGTATC TATTAAGTTC CAAGATTTTA AATTCAAGTG AATGGAAGAC
  TATCTGATTA TAAATGATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38098724	NES09266073	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27965905					SNP	T	T	T	T	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38098724	NES09266073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77776974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	155 bp distal
Cwc22	CWC22 spliceosome-associated protein	255 bp upstream
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	46 bp downstream
Rr559852	regulatory region 559852	506 bp distal
Rr559853	regulatory region 559853	within coordinates
Tssr24874	transcription start site region 24874	431 bp upstream
Tssr24875	transcription start site region 24875	303 bp upstream
Tssr24876	transcription start site region 24876	257 bp upstream
Tssr24877	transcription start site region 24877	238 bp upstream