rs27965908 SNP Detail

Summary

• ID
  rs27965908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77776795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATGTGA TACGATTAAT
  GATAATGCGG TATAGTAACA CCTTGAGTCA AAGCAATCCA GCTAGTAACA CTGTCATTCC
  TTACAAAGAA CACGAGAAAA GAACATGTGA GTCCGAGTGA ACTACAAAGT CCAGCATGCT
  CTGGCAGCGC GGACGGAAAT GAGTTGTAGT TGGACCGCAG TGCATGACGG GAATTGTAGT
  Y
  CGTTCGGATA GGAGGTCACA CTAGAGACAC TTTTGAGAGC TAGGTTTTCG AGGCATGCTT
  CTTATTCTAA CACTACTCAT CTTCTAAAGC CATAAAAAGT AGCTCTTAGT AGACACCGTA
  GCTTTTCTTT CTTTTTTTTT TTTTTCAGTG TAAAAGCTTA ACACTAAGAT ACATACTATG
  AAACTACCGC AGAGGCTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38098727	NES09266070	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27965908					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38098727	NES09266070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77776795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	within coordinates
Cwc22	CWC22 spliceosome-associated protein	76 bp upstream
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	within coordinates
Rr559852	regulatory region 559852	327 bp distal
Rr559853	regulatory region 559853	within coordinates
Tssr24874	transcription start site region 24874	252 bp upstream
Tssr24875	transcription start site region 24875	124 bp upstream
Tssr24876	transcription start site region 24876	78 bp upstream
Tssr24877	transcription start site region 24877	59 bp upstream