rs27965912 SNP Detail

Summary

• ID
  rs27965912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77776637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCGCCCC CACTCTGGCT
  CCTAGTCTAT CCCGAGTCTT CAGAGTTCCG TAATTACCTA AAGCTCCACC GCGCCGCCAT
  CATACCGGAA GAGCGTCAGT TCCCTTTCCC GGGTGAAAGT AGCGCGAGAA ATTAGTGAAA
  AACTGGTAGT GAATTGGCAG GTATGTGATA CGATTAATGA TAATGCGGTA TAGTAACACC
  Y
  TGAGTCAAAG CAATCCAGCT AGTAACACTG TCATTCCTTA CAAAGAACAC GAGAAAAGAA
  CATGTGAGTC CGAGTGAACT ACAAAGTCCA GCATGCTCTG GCAGCGCGGA CGGAAATGAG
  TTGTAGTTGG ACCGCAGTGC ATGACGGGAA TTGTAGTTCG TTCGGATAGG AGGTCACACT
  AGAGACACTT TTGAGAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38098731	NES09266066	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27965912					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38098731	NES09266066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77776637 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	within coordinates
Cwc22	CWC22 spliceosome-associated protein	within coordinates
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	within coordinates
Rr559852	regulatory region 559852	169 bp distal
Rr559853	regulatory region 559853	within coordinates
Tssr24874	transcription start site region 24874	94 bp upstream
Tssr24875	transcription start site region 24875	21 bp downstream
Tssr24876	transcription start site region 24876	38 bp downstream
Tssr24877	transcription start site region 24877	83 bp downstream