rs27965917 SNP Detail

Summary

• ID
  rs27965917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77776343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGGAGAG GTGTTCACCG ACAACCCAGA CCAAGGCCCA
  GACACGCACG CCCCGCCGCC GGCGCTAGGC CCAGCCGGCT CACACGGCAC CTCGCGGGCC
  R
  CCGGTGGAGA CGGCGCAGCC ACATGAGGAA AGCAAGGCCC ACCGGGCAAG CGCCCACTCG
  CAAGTCCCTG CCCTCTCCAC GCGACCTAGC AACCCGCCGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38098736	NES09266057	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27965917					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38098736	NES09266057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77776343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	within coordinates
Cwc22	CWC22 spliceosome-associated protein	within coordinates
Gm74688	predicted gene, 74688	115 bp upstream
Rr397064	regulatory region 397064	285 bp upstream
Rr559852	regulatory region 559852	within coordinates
Rr559853	regulatory region 559853	171 bp proximal
Tssr24874	transcription start site region 24874	184 bp downstream
Tssr24875	transcription start site region 24875	315 bp downstream
Tssr24876	transcription start site region 24876	332 bp downstream
Tssr24877	transcription start site region 24877	377 bp downstream