rs27965922 SNP Detail

Summary

• ID
  rs27965922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77775318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACAGAT CTTGGGGGCT
  AGCTTGAGGA ATGTGATCTA ACGGTTTTTA ACAAGACACG GGGACTTGGG AAGGAGAGCC
  TTGTCCACCA CATTCAAGCT GGCTAGAGTT CCTGCAGTAA TTTCAGACTT ACAGAGAAAA
  CAAGGGAAAT CTGACAGAAA AACCCTCAAA GACATTAGTT CCAATCTGCT GTATTACCGA
  Y
  AATCACTTCT TTCTGGAACT GGTCTATTTC CAGACTGAGT CTGACTGGGC CAGTCATGAA
  CAAGGTAGGA CTCAACTAAA ATAACCAGTC TAAACCCGGC TAGCCCACAC CTTTAATCCC
  AGCACTCAGA AAGCAGAGGC AGGCAGAACT CTTTAAATTT GAGGTCAGCC TGCTCTAAGG
  AGTGAGTTCC AAGACAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38098741	NES09266122	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27965922					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38098741	NES09266122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77775318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	766 bp proximal
Cwc22	CWC22 spliceosome-associated protein	within coordinates
Gm74688	predicted gene, 74688	1140 bp upstream
Rr397064	regulatory region 397064	1310 bp upstream
Rr559852	regulatory region 559852	650 bp proximal
Rr559853	regulatory region 559853	1196 bp proximal
Tssr24874	transcription start site region 24874	1209 bp downstream
Tssr24875	transcription start site region 24875	1340 bp downstream
Tssr24876	transcription start site region 24876	1357 bp downstream
Tssr24877	transcription start site region 24877	1402 bp downstream