rs27966904 SNP Detail

Summary

• ID
  rs27966904
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76429323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGACAGT GACCCTGAGG
  GGTTTGCCAG ACTGGGCTGA CTGGTCAGTA CCAACCTTTG CTGAGGCTCA CCAAAATTGG
  ATCATTTTGA TGCTGAATGC TGTTAACCAA GGTGTAAATG TACTCTTCAG TGTTGCTGAT
  CTTTCTTATT TTTTAATTGT CATTATTTTT CTTGGGTTAT TTTAAAATGA TGTCCATGTT
  M
  TCTCCAGGTA GCTGTAAAAA ATAAATAAAA TAAACTTCAT TTAAGATACC TGTTAGTGCT
  ACATGTCAGT TGTATGTGAT TGCAGGGTCA AATGTCATTC TTCTGCCTGA GGGAAACCAA
  GGAAATTGTG GTACAGAGGC CACCAACTTG TCAACTTCCC AAATCTTTTG TGCTCAAGCT
  CTTGATTCTT CTGGCCTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38104824	NES09255605	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27966904					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104824	NES09255605	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76429323 () rs orientation: forward

Symbol	Name	Function Class
Osbpl6	oxysterol binding protein-like 6	mRNA-UTR
Rr559704	regulatory region 559704	421 bp proximal