rs27967511 SNP Detail

Summary

• ID
  rs27967511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76680316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGATTTT TCTTATATTA
  ATTTAACTAT ATTAGGAATA TGCTAAGTGG TCACTGAATT CAAACAAAAG TATTCTATTT
  GAGAATATCA TAGGCCTGGG GCAATGCACA GCCACTGGAT ACAAGACTAT AGAGAGAGTT
  TGAAGTCATG TTAGAGCTGA TGCTAGAGAC CAGTAGTGTG AGAGGCAGGT AAAAGGCTCC
  R
  TTCTAGGAAG AGGTGGTTAT ACCTTTGGCG ACCGGTTCAG TCACCTGCTG CTTTTCACGT
  TTGGTAATTG AAATCTGTAT TTTTTCTTCA ACAACTTTCT TTGGTTCTTC GGGAGCTTTA
  AAGATATTGA TTATGGAAGA ATATCACAAT GAATCCCACA AACATCATAG AATAAATATC
  AACAAAGCAC AAAGACCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38103834	NES09264744	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27967511					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103834	NES09264744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76680316 () rs orientation: forward

Symbol	Name	Function Class
D2Mit93	DNA segment, Chr 2, Massachusetts Institute of Technology 93	1418 bp distal
Gm74880	predicted gene, 74880	within coordinates
Tssr24771	transcription start site region 24771	1064 bp upstream
Tssr24772	transcription start site region 24772	1010 bp upstream
Tssr24773	transcription start site region 24773	955 bp upstream
Tssr24774	transcription start site region 24774	324 bp upstream
Tssr24775	transcription start site region 24775	1702 bp downstream
Tssr24776	transcription start site region 24776	1743 bp downstream
Ttn	titin	Intron