rs27967517 SNP Detail

Summary

• ID
  rs27967517
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76678823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGTTCTGA CTGTGAGGAA CAACACCCAC ATCAAGCACA
  TCTAACGTTG TAGCAGCACA TGGCAATACA CACACACACA CACACACACA CACACACACA
  S
  GTTGTTGTAG CCAGAAGAGA GGTAAGCATT TGAAGACAGA TGAAATTGTC TATGTGCATG
  TCGTGTGAGT GGTATATACC TTTGGCTGGT GGTGCTTCCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103840	NES09264738	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967517					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103840	NES09264738	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76678823 () rs orientation: forward

Symbol	Name	Function Class
D2Mit93	DNA segment, Chr 2, Massachusetts Institute of Technology 93	within coordinates
Gm74880	predicted gene, 74880	within coordinates
Tssr24770	transcription start site region 24770	1956 bp upstream
Tssr24771	transcription start site region 24771	418 bp downstream
Tssr24772	transcription start site region 24772	471 bp downstream
Tssr24773	transcription start site region 24773	527 bp downstream
Tssr24774	transcription start site region 24774	1156 bp downstream
Ttn	titin	within coordinates