rs27967520 SNP Detail

Summary

• ID
  rs27967520
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76678755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCAAGG ATGACTAAGG
  CTCACCAAGT TACACCACAT GGGTAAATGG CTGCATTAAG AGCTGTACCT TTGGCAGGTG
  GAGCCTTCTC CTTTTTAGGA ATAGGCACAG GAACTTTTTC CTCTGGCTTC TTGGGAATCT
  CAGGCACTTT AAAGACATTG TTTAGAGTTA AGTTCTGACT GTGAGGAACA ACACCCACAT
  M
  AAGCACATCT AACGTTGTAG CAGCACATGG CAATACACAC ACACACACAC ACACACACAC
  ACACACAGGT TGTTGTAGCC AGAAGAGAGG TAAGCATTTG AAGACAGATG AAATTGTCTA
  TGTGCATGTC GTGTGAGTGG TATATACCTT TGGCTGGTGG TGCTTCCTTC TTTTTGGGAA
  CAGGAACAGG TTTTTTCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103843	NES09264733	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	C	C		C	C	A	C
ss146777169	ENSMUSSNP2610793	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						C				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967520					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103843	NES09264733	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76678755 () rs orientation: forward

Symbol	Name	Function Class
D2Mit93	DNA segment, Chr 2, Massachusetts Institute of Technology 93	3 bp proximal
Gm74880	predicted gene, 74880	within coordinates
Tssr24770	transcription start site region 24770	1888 bp upstream
Tssr24771	transcription start site region 24771	486 bp downstream
Tssr24772	transcription start site region 24772	539 bp downstream
Tssr24773	transcription start site region 24773	595 bp downstream
Tssr24774	transcription start site region 24774	1224 bp downstream
Ttn	titin	within coordinates