rs27967523 SNP Detail

Summary

• ID
  rs27967523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76678351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTAAAAG ATAATAAATA
  AGGTCACTAT GACATTTTCC TAATCACAGA GAGGTCTAGT GACTTAGGGA CAATTGAATG
  ATCACAGATG TGTCAATGAT TTCACTGTAA GACAGAAGCT AATAATAGTT ACAAAACAAG
  GTGCTAGACA TGCAGGAGAG TTACAATAAA AACCACCAAA TAAACACAGA ACAGAGACAC
  R
  GACAGCACAA AAGACGTGGT GATGGTTTTG GCCATTTTGA TGGCGTGAAT TTGTTTTTCA
  CTAAGAATTC TCCACCGAAG AGGGCACAAG TGTTAAATAG AAGCATGCTG GAATGGCCAC
  ATTTGGAGAT GAATATATGG CAACTGGCTT ATGTGACCAG CTAAGTGGTT CTTGTTCTGG
  TGTTAATGTT ATTAACATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38103846	NES09264726	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27967523					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103846	NES09264726	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76678351 () rs orientation: forward

Symbol	Name	Function Class
D2Mit93	DNA segment, Chr 2, Massachusetts Institute of Technology 93	407 bp proximal
Gm74880	predicted gene, 74880	within coordinates
Tssr24770	transcription start site region 24770	1484 bp upstream
Tssr24771	transcription start site region 24771	890 bp downstream
Tssr24772	transcription start site region 24772	943 bp downstream
Tssr24773	transcription start site region 24773	999 bp downstream
Tssr24774	transcription start site region 24774	1628 bp downstream
Ttn	titin	within coordinates