rs27967524 SNP Detail

Summary

• ID
  rs27967524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76678275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGGTGG TTCCACCTTT
  TTGGGAACAG GTACTGGTGG CTTCTCCTCT GGTACAGGCT TCTTGGGCAC TTCCGGGACT
  TAAAAGATAA TAAATAAGGT CACTATGACA TTTTCCTAAT CACAGAGAGG TCTAGTGACT
  TAGGGACAAT TGAATGATCA CAGATGTGTC AATGATTTCA CTGTAAGACA GAAGCTAATA
  R
  TAGTTACAAA ACAAGGTGCT AGACATGCAG GAGAGTTACA ATAAAAACCA CCAAATAAAC
  ACAGAACAGA GACACGGACA GCACAAAAGA CGTGGTGATG GTTTTGGCCA TTTTGATGGC
  GTGAATTTGT TTTTCACTAA GAATTCTCCA CCGAAGAGGG CACAAGTGTT AAATAGAAGC
  ATGCTGGAAT GGCCACATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38103847	NES09264724	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967524					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103847	NES09264724	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76678275 () rs orientation: forward

Symbol	Name	Function Class
D2Mit93	DNA segment, Chr 2, Massachusetts Institute of Technology 93	483 bp proximal
Gm74880	predicted gene, 74880	within coordinates
Tssr24770	transcription start site region 24770	1408 bp upstream
Tssr24771	transcription start site region 24771	966 bp downstream
Tssr24772	transcription start site region 24772	1019 bp downstream
Tssr24773	transcription start site region 24773	1075 bp downstream
Tssr24774	transcription start site region 24774	1704 bp downstream
Ttn	titin	Intron