rs27967527 SNP Detail

Summary

• ID
  rs27967527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76678065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCAAGCA TAGTCTGGAA
  AATTATGATA AAAATCATAG TGAAGAAACC CCAAAGCAGC ATTTCATTTT AAAAATAGAA
  ATCTGTTTTT GTAAAGAGAT GATACTAAAC TGGTGTACCT AAAGAACATA TTATTGAACT
  AATTAAATAT TTTATTCTCC TATAAATCTG AAATTAAATT GTGTGCTCCA GCACGTTTGT
  R
  TACCTTTGGC TGGTGGTGGT TCCACCTTTT TGGGAACAGG TACTGGTGGC TTCTCCTCTG
  GTACAGGCTT CTTGGGCACT TCCGGGACTT AAAAGATAAT AAATAAGGTC ACTATGACAT
  TTTCCTAATC ACAGAGAGGT CTAGTGACTT AGGGACAATT GAATGATCAC AGATGTGTCA
  ATGATTTCAC TGTAAGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38103850	NES09264719	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	A	G	A		G
ss320356380	CHEV_2_76685778	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27967527					SNP	G	G	G	G	G	G	A	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38103850	NES09264719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76678065 () rs orientation: forward

Symbol	Name	Function Class
D2Mit93	DNA segment, Chr 2, Massachusetts Institute of Technology 93	693 bp proximal
Gm74880	predicted gene, 74880	within coordinates
Tssr24770	transcription start site region 24770	1198 bp upstream
Tssr24771	transcription start site region 24771	1176 bp downstream
Tssr24772	transcription start site region 24772	1229 bp downstream
Tssr24773	transcription start site region 24773	1285 bp downstream
Tssr24774	transcription start site region 24774	1914 bp downstream
Ttn	titin	within coordinates