rs27967845 SNP Detail

Summary

• ID
  rs27967845
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74551412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATGGAGG GTGATGGGGG
  CCAATTCTCT TCTTTTTTTG TGCCTCTTCT TGGGAGGTGG GGGACTTCCT GCCATTCCCC
  ACTCCCTTCT CTCATGTCTC CCACAAGCAG AGACAGCCAC ATTCTCTGTG TGGAGTGTCC
  AGCCCTTTTC CTGGATTGCT CAGCAGGATA GACAGAGATA GTCCCACACT TCTTTCTTAG
  S
  CTCTCCCTGT GATGGGGGCC AGCAGTAGGG AGGAGTTACA GAAGAGCCCA CTCAGATGTG
  GGCCTTCAGG GACCCTTGAG CACTGAGCTA AATGACTTGG GCACACAGTG GGGTTGTGCA
  CATCTGACTT CCTGGGCTCA GGTTCTTTGA GAGCCTCCTG TGCTTCCTCA CACCCCGCAC
  GCACCCGGCC CCTTCACACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38112866	NES09259317	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967845					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112866	NES09259317	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74551412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hoxd3	homeobox D3			Intron
Hoxd4	homeobox D4			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr559377	regulatory region 559377			905 bp distal
Rr559378	regulatory region 559378			within coordinates
Rr559379	regulatory region 559379			750 bp proximal
Rr559380	regulatory region 559380			921 bp proximal
Tssr18438	transcription start site region 18438			984 bp upstream