rs27967846 SNP Detail

Summary

• ID
  rs27967846
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74550442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGGGCC ACTGGAGGTG
  TGATGCAATG GCAAGGGGTG GAGGAAGATG CATACTTGTT TCTTAATCAC TTTGTCTTTG
  AGCTCTAAGA TCAGAAAACA AAGATGTCTG CCTCAGTGTA TTTCTCCCCT CCCCCCCCCT
  CCATTTTCTC ACACCTGATC TGATTTCCTG TCACTCCCTT AAACACCCAG AGTAGGCTCC
  S
  TCTTCCCGTG GAACCTAAGT TTGCAAGCAT GTCTCAGGCA TCATTCTTCA TCATTTCTCA
  TCCATAAAAA GTAACTACTG ATTGCCAGCC AGACACCGGG CACTGTTATC CATCCACCAT
  GTCTCAAGGC TTGTCTTTAA CCGGCTCTTG CCTCCTTACA AAGGACTCAT CACAGTGGCT
  TGGAAAGTCA AATACCCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38112867	NES09259316	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967846					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112867	NES09259316	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74550442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hoxd3	homeobox D3			Intron
Hoxd4	homeobox D4			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr559377	regulatory region 559377			within coordinates
Rr559378	regulatory region 559378			781 bp proximal
Rr559379	regulatory region 559379			1720 bp proximal
Rr559380	regulatory region 559380			1891 bp proximal
Tssr18438	transcription start site region 18438			1954 bp upstream