rs27967850 SNP Detail

Summary

• ID
  rs27967850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74548162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAGCGG CAGCAGAAGG
  ATCAACATTT GAATTTGAGG CCAGCCTAGG CTTCATATGG AGTTCAAACC CAGCCTAGAC
  TACTTAGCAA GTCCCTATCT CAATGAAACA AAGCAATAAA ATAAATCTTG GTCAGGTGTC
  ATTGGCAATG GCCTCTCAGA TCTCAGTGTC TAGTACCCAG GAGGAAAGCT CTCTTGGCTC
  Y
  TTAACAGGTG GCCTTACACT CCAGTAGGTG TGTTTGGAAC TTCTTGGGAG GGCTTGCAGT
  CTCTCCTAAG CTCACTGTCA GGTCCTCTAG TCCCTTTCAG CATCACCCTG TTGTCCTGTC
  AGCCGCACCC ACCCAGAGGG TCATTCTTGT ACAGTCCCAG GGCATCCTAG TCACCTGGAC
  TGTGAATGGG GTGGAGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38112872	NES09259398	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967850					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112872	NES09259398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74548162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11803	CpG island 11803	1599 bp distal
Hoxd3	homeobox D3	within coordinates
Hoxd3os1	homeobox D3, opposite strand 1	1688 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44608	regulatory region 44608	1962 bp distal
Tssr533	transcription start site region 533	1842 bp upstream
Tssr534	transcription start site region 534	1811 bp upstream
Tssr18437	transcription start site region 18437	823 bp downstream
Tssr24625	transcription start site region 24625	1818 bp upstream
Tssr24626	transcription start site region 24626	1791 bp upstream
Tssr24627	transcription start site region 24627	1683 bp upstream
Tssr24628	transcription start site region 24628	1661 bp upstream