rs27967851 SNP Detail

Summary

• ID
  rs27967851
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74547141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCGTTCA AAGGTGACAA
  CTCACCCAGC TTCACTGATC CTCAGTTGAC CCCTAGCAAT GTCCCCCTCT TTGTTAATTT
  AGGGCAATGA TTCTCAGAGG TCTGTGTGAG CCCAAATGTC TGGATAAATG AGGTTTCTAG
  GTTCCACACC AAACACCCTG AATTCAAATG TCAAGAAGCA GTGTCCAGGC ATCCTGAAAA
  S
  ACTCTCCCCA AGGCAATGAA GATATGTACA TAGGTTGGAG AGCCATGGGT TAAGGGTGTC
  TCCTGCTTAG CTCTTTATTC TCCTGGTCCT GAGTTTCTTC TTTGTCTACA CTGGGCATAC
  CCAAAGCCCC TGGAGTTACA ATCATGACTA TCTGGGTTTT GTTTTTGTTT TTGTGTTTTT
  TTTTTTTTTT TTTAGTTACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38112873	NES09259428	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967851					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112873	NES09259428	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74547141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11802	CpG island 11802	1564 bp distal
Cpgi11803	CpG island 11803	578 bp distal
Hoxd3	homeobox D3	within coordinates
Hoxd3os1	homeobox D3, opposite strand 1	667 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44608	regulatory region 44608	941 bp distal
Rr44609	regulatory region 44609	341 bp distal
Rr57045	regulatory region 57045	within coordinates
Rr57046	regulatory region 57046	859 bp proximal
Tssr533	transcription start site region 533	821 bp upstream
Tssr534	transcription start site region 534	790 bp upstream
Tssr18437	transcription start site region 18437	191 bp upstream
Tssr24625	transcription start site region 24625	797 bp upstream
Tssr24626	transcription start site region 24626	770 bp upstream
Tssr24627	transcription start site region 24627	662 bp upstream
Tssr24628	transcription start site region 24628	640 bp upstream