rs27967852 SNP Detail

Summary

• ID
  rs27967852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74546911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCACA GCATGGATGG
  AGACCCTTTC TAGCAAGGCA ACTGACCTCC TCCTGCTAAT TTAGAACAGC GCCTGGGCCC
  TGTGACACAT TTCTGACTCT CTGAAAGTCT GAGGCAATCC CACCTGCACC CCATAGCTTG
  CGAATCATGC TGGTGTGTGG ACTTCTGTCC CCAACACTCC TGCCTCACCA CTGTGCTCGT
  Y
  GCAGGCCTAC TGTGTGGTTC GCCGGCTGGT CTCCGTTCAA AGGTGACAAC TCACCCAGCT
  TCACTGATCC TCAGTTGACC CCTAGCAATG TCCCCCTCTT TGTTAATTTA GGGCAATGAT
  TCTCAGAGGT CTGTGTGAGC CCAAATGTCT GGATAAATGA GGTTTCTAGG TTCCACACCA
  AACACCCTGA ATTCAAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38112874	NES09259427	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967852					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112874	NES09259427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74546911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11802	CpG island 11802	1334 bp distal
Cpgi11803	CpG island 11803	348 bp distal
Hoxd3	homeobox D3	within coordinates
Hoxd3os1	homeobox D3, opposite strand 1	437 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44608	regulatory region 44608	711 bp distal
Rr44609	regulatory region 44609	111 bp distal
Rr57045	regulatory region 57045	within coordinates
Rr57046	regulatory region 57046	1089 bp proximal
Tssr533	transcription start site region 533	591 bp upstream
Tssr534	transcription start site region 534	560 bp upstream
Tssr18437	transcription start site region 18437	421 bp upstream
Tssr24625	transcription start site region 24625	567 bp upstream
Tssr24626	transcription start site region 24626	540 bp upstream
Tssr24627	transcription start site region 24627	432 bp upstream
Tssr24628	transcription start site region 24628	410 bp upstream