rs27967857 SNP Detail

Summary

• ID
  rs27967857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74545309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGATAG TTTTGCAAAA
  CTAGAGGAGA AATTATGCTC TCTAAACCCA GGGTGGTGTT CCCCCTCTCT GTTAACAGAT
  GACAGGGAGA AGCTGCACCC CATATGTGAA AATTCTAATT CAAAGACAAC ACTGAGTGTC
  CATCTGCAAC ATGGAGATTT TGTTGATTTG ATTGAACCAG ACTAGAAAGA TTGATTTGAG
  R
  CATTAATTCA GATTTTCCTG CAAAAGAAAA CCACGTGTTT CATGCCTCTT TTAGATAGGA
  TTCTCGAGTC CTTCCACAGC CAGGCGCTGG AGTGGTGTGC GTTGGAACCC CCGGCACTGT
  GCTTGAGGCG GCATCGCTCA GAGCCTCTGC AGTGCGGGGC CGCGCACGCC CAGCGCATGT
  GCAGTGAAAT AGCCCAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38112879	NES09259618	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967857					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112879	NES09259618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74545309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11802	CpG island 11802	27 bp proximal
Cpgi11803	CpG island 11803	881 bp proximal
Hoxd3	homeobox D3	within coordinates
Hoxd3os1	homeobox D3, opposite strand 1	within coordinates
Igs15	intergenic site 15	within coordinates
Rr44608	regulatory region 44608	692 bp proximal
Tssr533	transcription start site region 533	1008 bp downstream
Tssr534	transcription start site region 534	1037 bp downstream
Tssr24624	transcription start site region 24624	669 bp upstream
Tssr24625	transcription start site region 24625	1024 bp downstream
Tssr24626	transcription start site region 24626	1055 bp downstream
Tssr24627	transcription start site region 24627	1159 bp downstream
Tssr24628	transcription start site region 24628	1172 bp downstream