rs27967859 SNP Detail

Summary

• ID
  rs27967859
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74544317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGCTGGG GTGGGCTGGA TGCTCGGCTG GCCAAGTTGT
  AGGTTTGGGG TTTCAGCTGC TTTTTCCTGG GTTTGGTGGC CCAGCGTGTT TCGGTGAAGA
  W
  CGTGGTTCTG ATTACACAGA GGAAGGTGGT GCCAGGTGCA AACATGGAGG ATGTAGGGTA
  TCATTGTGAG CCTCGTGGTG ATATTCAAAG CTTATTGGAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss38112881	NES09259614	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27967859					SNP	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112881	NES09259614	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74544317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11801	CpG island 11801	1382 bp distal
Cpgi11802	CpG island 11802	1019 bp proximal
Cpgi11803	CpG island 11803	1873 bp proximal
Gm38462	predicted gene, 38462	1915 bp upstream
Hoxd3	homeobox D3	within coordinates
Hoxd3os1	homeobox D3, opposite strand 1	within coordinates
Igs15	intergenic site 15	within coordinates
Rr44608	regulatory region 44608	1684 bp proximal
Rr559373	regulatory region 559373	1912 bp distal
Rr559374	regulatory region 559374	1404 bp distal
Rr559375	regulatory region 559375	1944 bp proximal
Tssr533	transcription start site region 533	2000 bp downstream
Tssr18435	transcription start site region 18435	1973 bp downstream
Tssr18436	transcription start site region 18436	1816 bp downstream
Tssr24624	transcription start site region 24624	290 bp downstream