rs27968341 SNP Detail

Summary

• ID
  rs27968341
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71855674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC TTCTTCTGAT GCCTCTGATT
  V
  TGTGTCCCAT GCTTAGGATA GGCCT                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss38121777	NES09273010	PERLEGEN	MM_PANEL2	f	SNP	A			A		A	A	A	C
ss45217694	mCV24291016	ABI	CRAMUS_MOUSE	f	SNP		A	G		A	A
ss146754786	ENSMUSSNP5942858	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27968341					SNP	A	A	G	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38121777	NES09273010	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71855674 () rs orientation: forward

Symbol	Name	Function Class
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4	within coordinates
Rr54771	regulatory region 54771	1105 bp distal
Rr373343	regulatory region 373343	59 bp upstream