rs27968345 SNP Detail

Summary

• ID
  rs27968345
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71854471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCAGAC CTCTCCAGCC
  TGTGCATGTG CAGCTAATGA TTCCATAAGG CCCCACCCTC AGTACACTCC TTCCATGGCC
  TATTCTGTGA GTCACTTCAC TGCAAATTGC CACTACCGGC CCAGTGAGTC CACCATGCCT
  CCTCTTTGCC CGTGGTTCAC ATAGAACATC AGCAAACAAC AAGACAGTTA TATGACTCCT
  K
  CTTTCCCTCT TGTGTTTCTC TTCTTGCTTG GACCACAGTC CAGTGTTGCC TGTTATCTAT
  TTTCTGAAAG CAGGTGCTTT GTGTATTTGC TCAATTTCTA TTTGCTCTGC AAGAATTAGT
  CTGGCACGCC ATCACAGTGT GAAGTGAAAG TTTTTCTTCC TTTAATAGTA AAACGAGAGG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38121781	NES09273046	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27968345					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38121781	NES09273046	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71854471 () rs orientation: forward

Symbol	Name	Function Class
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4	within coordinates
Rr44434	regulatory region 44434	1871 bp distal
Rr54770	regulatory region 54770	1906 bp distal
Rr54771	regulatory region 54771	within coordinates
Rr373343	regulatory region 373343	1262 bp upstream