rs27968790 SNP Detail

Summary

• ID
  rs27968790
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72029394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAATTG TCACTTCCTA
  AGAGTCGACA AGGAAGACTT CAATCGGATT CTGAGGGTGA GTTGAGAGAC ATCCAATGTT
  TCCCTTCTTG AATTAAAAAA ATAAATATAT TTGAGTAGAT TGTTCATCCC ACGGGAATGT
  GGCAAATAGA TGCTTGAACA AAGGGCCTTT ATTCTGAAAC AGGCATACTC AGTGGACTGG
  K
  GTACATTCTG GAGACCAGCT GCGGACATCA AATATTAGGC TGGAGCAAAT TCCCCTGCAC
  ATGGCTGTGC TGGTCCCTAT GACAGGATAA CATTAGTAGT TGCCTTAGCA AGATGGCACA
  GTCTACTGTA TTTCTCTCTG GTCTCCTACA GATTCTTCTT AATGTCCTTT TGTACCCTCT
  GGTCCAGCAG AGCGGCAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38120910	NES09276080	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27968790					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120910	NES09276080	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72029394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75163	predicted gene, 75163			within coordinates
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4			Intron
				Noncoding-Transcript-Variant
Rr558928	regulatory region 558928			1670 bp distal
Rr558929	regulatory region 558929			1818 bp distal