rs27969771 SNP Detail

Summary

• ID
  rs27969771
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74241383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAAAAGT GTAAAGTTGC
  AATGGGACAA GAGCGTCAAA GGGGGCATCC GGAATACTTA GAAGAATGTC TGAAAAGAAG
  GAGTCCACCT ACCTTGAAAA ATCGGGAACA AGACACCCAC GGAGATGGCA CAAGGGTCAG
  AGAGATAAGT CAGATGGTAA TTCTCTCTAA TATAGAACAA CATGTTCCAA GGTCACTAAA
  R
  GAGAGAACTC TGAGAAGGCC AGGCTAACCG AATGGAAGAC AATGAAGAGG AGCCTGGTAC
  AAGTTAAGCC TGGGCCTTGT GACCCTCCTC AGTTTATACT CAAATGCTTT GTGCTCTTCT
  TCTGAGCCCT GTGAATCACG GAAGGGTGCT AAGTAGAAGC TAATGCAATC AAGGCTGCAT
  TTTGAAAAGG CTTCAGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38113690	NES09262878	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27969771					SNP	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38113690	NES09262878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74241383 () rs orientation: forward

Symbol	Name	Function Class
Rr559308	regulatory region 559308	764 bp distal