rs27970119 SNP Detail

Summary

• ID
  rs27970119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72307497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGCTTGC AGCTGCGAGC
  TGGAACGTAA CTCTTTTTGC TCCAACGGAA GCCAGAACTT ATGTCCTGCC CTGGAGTGGG
  TTGAAGAGTG GGGGGATGGG CGGAAAGGAA GACAGTGACG TGCTTCAAAT AAATATCGGG
  TTCGGGGGCC CTTGTGGCGA GGTCTGAGTG GGTAGACGGA GTCGTGGTCT CATAGCGGAT
  Y
  TCCGCGCGTG GGGAAATGGG CTTGGAGTTT GGCTTGCCTT GGTGCATATT TGGACACCTG
  ACTGGAGGAA TCGACTTCAC CTCTCCGCAC TTCAGTTTTC TTACTTATTT AAGTGATGGT
  AACGTCGCTG CAAAGAATTA AGCGAACATC AGTACCAAAT CTGCCGTCAA AGAACACTCA
  CCGTAAACAG AATTAAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119738	NES09284531	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27970119					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119738	NES09284531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72307497 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	within coordinates
Cpgi11756	CpG island 11756	within coordinates
Rr397036	regulatory region 397036	1087 bp downstream
Tssr18351	transcription start site region 18351	1153 bp downstream
Tssr18352	transcription start site region 18352	941 bp downstream
Tssr18353	transcription start site region 18353	929 bp downstream
Tssr18354	transcription start site region 18354	894 bp downstream