rs27970120 SNP Detail

Summary

• ID
  rs27970120
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72307325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTGAGC ATTTCTTGAG
  AACTTGGGTT GTGCACGTGG GGGGAGGTAT TGTTTTAGTC CTAGGCTGTG GTCAGATGCA
  ATTTTGGGGC CCAGCGATGC AAGTCGTGTG CCGCGACCGT TTAGTAACCT TCCCTGCGTC
  CCCCAACTCC CCACCCGTCC CACCCTTTTC TTCCCGGCTT GCAGCTGCGA GCTGGAACGT
  W
  ACTCTTTTTG CTCCAACGGA AGCCAGAACT TATGTCCTGC CCTGGAGTGG GTTGAAGAGT
  GGGGGGATGG GCGGAAAGGA AGACAGTGAC GTGCTTCAAA TAAATATCGG GTTCGGGGGC
  CCTTGTGGCG AGGTCTGAGT GGGTAGACGG AGTCGTGGTC TCATAGCGGA TCTCCGCGCG
  TGGGGAAATG GGCTTGGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38119739	NES09284530	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		A	A	A	A		A
ss320342599	CHEV_2_72315038	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27970120					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119739	NES09284530	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72307325 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	within coordinates
Cpgi11756	CpG island 11756	within coordinates
Rr397036	regulatory region 397036	915 bp downstream
Tssr18351	transcription start site region 18351	981 bp downstream
Tssr18352	transcription start site region 18352	769 bp downstream
Tssr18353	transcription start site region 18353	757 bp downstream
Tssr18354	transcription start site region 18354	722 bp downstream