rs27970121 SNP Detail

Summary

• ID
  rs27970121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72306455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGTCTC AGGACCTCGG
  CAGCCACTTT CGCGCCACTT CCCAGGACCG CGCAGCTTCA TAAAAAGCCA GTGGCACTGA
  GTTCCCACAA CGCCACTGTT TCATAGAACA TTCAGCAGTT TCCGAGGACA CTCAAGGTTA
  TTACAACCAC GAGAACCGCT TCTATTTTTT TCCAGAGCTG GGACGCTTCG GGTACCGCTA
  R
  AGAGGTCATC TTAGCTGGCA GGACCTGCGT CCCGGCGCGG GAAAGCCGGT GGCCCCGCCC
  CTCCGGCGGC GGAGTGCGCG CCCCGCCTCT GTCCCGGAGC TCGGGTTGTT CGGGCTCTGA
  GTGCTGGTGT GTTCCGACGA ACTATCCCCG TTCCGAGTGC CTGGGTACCC GCCGCCAACA
  TGGAGGCTCG CCGCGCGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38119740	NES09284529	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss320342586	CHEV_2_72314168	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27970121					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119740	NES09284529	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72306455 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	85 bp upstream
Cpgi11756	CpG island 11756	within coordinates
Rr397036	regulatory region 397036	45 bp downstream
Rr558978	regulatory region 558978	826 bp distal
Rr558979	regulatory region 558979	within coordinates
Rr558980	regulatory region 558980	59 bp proximal
Tssr18351	transcription start site region 18351	111 bp downstream
Tssr18352	transcription start site region 18352	62 bp upstream
Tssr18353	transcription start site region 18353	102 bp upstream
Tssr18354	transcription start site region 18354	114 bp upstream