rs27970122 SNP Detail

Summary

• ID
  rs27970122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72306162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAACTGGTC TATTGACTAC ATATAGATAG TGGTGTGGTT
  GCTAGATAAG AGGTGCTATG CTCTCAGATA TTTGTGGGTG GTATCCCCGT TCTGTTCTTT
  R
  ACATTTTTAA GAGATTAAAC TACAGCGAAA GTGTGAACGC AGTAAGAGGC TCTACCAGCC
  TTACAATCTC CCGTTTTGTA TGCAAATCAG ACGGCCAGTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38119741	NES09284528	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27970122					SNP	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119741	NES09284528	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72306162 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	378 bp upstream
Cpgi11756	CpG island 11756	94 bp proximal
Rr397036	regulatory region 397036	within coordinates
Rr558978	regulatory region 558978	533 bp distal
Rr558979	regulatory region 558979	within coordinates
Rr558980	regulatory region 558980	352 bp proximal
Tssr18351	transcription start site region 18351	178 bp upstream
Tssr18352	transcription start site region 18352	355 bp upstream
Tssr18353	transcription start site region 18353	395 bp upstream
Tssr18354	transcription start site region 18354	407 bp upstream