rs27970125 SNP Detail

Summary

• ID
  rs27970125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATCTATGA TTATAATTAA AGCTCTTTTA
  AAAAGCACCC AAGGTTTTTC GGTCGTTGCT GTTTGGGTTT TTTTTTTTCC CCCTGTGTTT
  TACTCTTTAA AAACAGGGGA GCCTCGTTTC ATCCCTGTGC CGGTCTTAGT GAGAAGGGCT
  R
  Taagaaagaa agaaagaaag aaagaaagaa agaaagaaag aaagaaagaa agaaagaaag
  aaagaTCTTC TAACTAGCTC TGGTTGTTCC CAATTTTGCC TGGAGAAAAA TGGACAATCC
  ACAGTGTAAT CGCCTGCAGC TTTTATCTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38119744	NES09284589	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss320342580	CHEV_2_72313523	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27970125					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119744	NES09284589	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305810 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	730 bp upstream
Cpgi11756	CpG island 11756	446 bp proximal
Rr397036	regulatory region 397036	300 bp upstream
Rr558978	regulatory region 558978	181 bp distal
Rr558979	regulatory region 558979	203 bp proximal
Rr558980	regulatory region 558980	704 bp proximal
Tssr18351	transcription start site region 18351	530 bp upstream
Tssr18352	transcription start site region 18352	707 bp upstream
Tssr18353	transcription start site region 18353	747 bp upstream
Tssr18354	transcription start site region 18354	759 bp upstream