rs27970126 SNP Detail

Summary

• ID
  rs27970126
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCCGGA TGCCCCCTTC
  GTTCTGTGAC CTCACATGGT CAGTTCTACT TGCACAAACC ATATTCACAA GAACATTGTA
  CTAAGGACAA TTTTAGGTCT CCATCCACAT ACTTATTCAT CCAACAAGTG TTGGTTGAAC
  TCCTGGCTGC TACCAGGAAT TTTGCCAAAC AAATCAATTA GCTGCTTCTC TTGATGCCTA
  M
  GTTGGAGACT GGAGTTCTTT GTCTCTAGCA CAGAGGGAGG GTGACCCCTG GGCAGCTCCT
  TCCAATCCAT TGTCTTCCTC GGTTATTTAT GTCTTTATGG TCAGTACCTA GAGAGGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTGCGCATGC TCTCTTCACA GAAAAGGACT
  GTGGCAACAT CAATACTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119745	NES09284588	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27970126					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119745	NES09284588	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305410 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	1130 bp upstream
Cpgi11756	CpG island 11756	846 bp proximal
Rr397036	regulatory region 397036	700 bp upstream
Rr558978	regulatory region 558978	within coordinates
Rr558979	regulatory region 558979	603 bp proximal
Rr558980	regulatory region 558980	1104 bp proximal
Tssr18351	transcription start site region 18351	930 bp upstream
Tssr18352	transcription start site region 18352	1107 bp upstream
Tssr18353	transcription start site region 18353	1147 bp upstream
Tssr18354	transcription start site region 18354	1159 bp upstream