rs27970127 SNP Detail

Summary

• ID
  rs27970127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGATATA CATTGTCTGC
  AGGACACACA CAAGCACAGA AGTGAAAACT TTAAGGAAAC AACATGCACA CGTCCTGGGC
  TCACATTGGA TTTCGTTGAA AAAGAAATGC AGGAGCACAG AGAGACAAGC CTGTTCCAAG
  AAGAGTAAAA ATGCTCAGTG TAGAACATTA CCCAGGCAAA GTGGCCCGGA TGCCCCCTTC
  R
  TTCTGTGACC TCACATGGTC AGTTCTACTT GCACAAACCA TATTCACAAG AACATTGTAC
  TAAGGACAAT TTTAGGTCTC CATCCACATA CTTATTCATC CAACAAGTGT TGGTTGAACT
  CCTGGCTGCT ACCAGGAATT TTGCCAAACA AATCAATTAG CTGCTTCTCT TGATGCCTAA
  GTTGGAGACT GGAGTTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119746	NES09284587	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27970127					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119746	NES09284587	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305230 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	1310 bp upstream
Cpgi11756	CpG island 11756	1026 bp proximal
Rr397036	regulatory region 397036	880 bp upstream
Tssr18351	transcription start site region 18351	1110 bp upstream
Tssr18352	transcription start site region 18352	1287 bp upstream
Tssr18353	transcription start site region 18353	1327 bp upstream
Tssr18354	transcription start site region 18354	1339 bp upstream