rs27970128 SNP Detail

Summary

• ID
  rs27970128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTTCTT CCTCTTTCTC
  TTCTCCTCCT CCTTCTCCTC CTCCTCCTCC TCCTCCTCCT CCAAAGTATC ATACCTGAAA
  TTCTCTTTTG TATCTCTGCT CCTCCATCAG AGTGTACACT CTCTGGACCT TGTATCCTCA
  GTACTCAGAA TAGCACCTGC TTACAACCTT GCACTCAGTT AGGGGCAGGA CTTTGAACCG
  Y
  CCTGATGGTG AAGCCCAGAG GATATACATT GTCTGCAGGA CACACACAAG CACAGAAGTG
  AAAACTTTAA GGAAACAACA TGCACACGTC CTGGGCTCAC ATTGGATTTC GTTGAAAAAG
  AAATGCAGGA GCACAGAGAG ACAAGCCTGT TCCAAGAAGA GTAAAAATGC TCAGTGTAGA
  ACATTACCCA GGCAAAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119747	NES09284586	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27970128					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119747	NES09284586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305013 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	1527 bp upstream
Cpgi11756	CpG island 11756	1243 bp proximal
Rr397036	regulatory region 397036	1097 bp upstream
Rr558978	regulatory region 558978	128 bp proximal
Rr558979	regulatory region 558979	1000 bp proximal
Rr558980	regulatory region 558980	1501 bp proximal
Tssr18351	transcription start site region 18351	1327 bp upstream
Tssr18352	transcription start site region 18352	1504 bp upstream
Tssr18353	transcription start site region 18353	1544 bp upstream
Tssr18354	transcription start site region 18354	1556 bp upstream