rs27970130 SNP Detail

Summary

• ID
  rs27970130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72304873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTCTTCAG CTTTTCACTG TACTTTCTTC CTCTTCCTCC
  TCCTCTTCTT CCTCTTTCTC TTCTCCTCCT CCTTCTCCTC CTCCTCCTCC TCCTCCTCCT
  Y
  CAAAGTATCA TACCTGAAAT TCTCTTTTGT ATCTCTGCTC CTCCATCAGA GTGTACACTC
  TCTGGACCTT GTATCCTCAG TACTCAGAAT AGCACCTGCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119749	NES09284583	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27970130					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119749	NES09284583	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72304873 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	1667 bp upstream
Cpgi11756	CpG island 11756	1383 bp proximal
Rr397036	regulatory region 397036	1237 bp upstream
Rr558978	regulatory region 558978	268 bp proximal
Rr558979	regulatory region 558979	1140 bp proximal
Rr558980	regulatory region 558980	1641 bp proximal
Tssr18351	transcription start site region 18351	1467 bp upstream
Tssr18352	transcription start site region 18352	1644 bp upstream
Tssr18353	transcription start site region 18353	1684 bp upstream
Tssr18354	transcription start site region 18354	1696 bp upstream