rs27970378 SNP Detail

Summary

• ID
  rs27970378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71576606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG AGTAGCTTTC TGCATGCCAC
  Y
  TGTAGGTTTT GATTCCAGCA TCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38122701	NES09282361	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	C		T	C	T	C		T	T	C	T		C
ss45307815	mCV24287563	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss320340052	CHEV_2_71584319	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27970378					SNP	C	C	T	T	T	T	C	C	T	C	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38122701	NES09282361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71576606 () rs orientation: forward

Symbol	Name	Function Class
Gm13647	predicted gene 13647	865 bp downstream
Gm13663	predicted gene 13663	1245 bp upstream
Gm17250	predicted gene, 17250	within coordinates
Gm74659	predicted gene, 74659	293 bp downstream
Rr62438	regulatory region 62438	within coordinates
Rr373341	regulatory region 373341	212 bp downstream
Tssr18283	transcription start site region 18283	401 bp downstream
Tssr24495	transcription start site region 24495	490 bp upstream